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Sample GSM848336 Query DataSets for GSM848336
Status Public on Apr 05, 2012
Title Adult_female_Df(2L)ED4559/+_Df(2R)ED1612/+
Sample type RNA
 
Source name Adult_female_Df(2L)ED4559/+_Df(2R)ED1612/+
Organism Drosophila melanogaster
Characteristics gender: female
age: adult (0-24hr)
genotype/variation: Df(2L)ED4559/+_Df(2R)ED1612/+
Treatment protocol Each sample, containing 15 adult female flies in age 0-24h, were collected and frozen in -70 ̊ C prior to RNA extraction
Growth protocol Flies were cultivated and crossed in vials with potato-yeast-agar medium at 25 ̊ C.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol reagent (Invitrogen) followed by a purification using RNeasy kit (Qiagen) according to the instruction by the suppliers.
Label biotin
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description DP19.CEL
Gene expression data from adult females
Data processing Raw data was normalized using RMA (R and Bioconductor).
 
Submission date Dec 13, 2011
Last update date Aug 28, 2018
Contact name Jan Larsson
E-mail(s) [email protected]
Organization name Umea University
Department Molecular Biology
Lab Jan Larsson
Street address Umea University
City Umea
ZIP/Postal code SE-90187
Country Sweden
 
Platform ID GPL1322
Series (1)
GSE34400 Buffering and proteolysis are induced upon segmental haploidy in Drosophila melanogaster.
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1616608_a_at 13.2905167536145
1622892_s_at 7.1852347570755
1622893_at 14.084404346128
1622894_at 7.49012664834225
1622895_at 8.04773073526906
1622896_at 8.58729017059283
1622897_at 4.69722238885646
1622898_a_at 10.2746522016863
1622899_at 3.93228589993576
1622900_at 3.27563409494473
1622901_at 6.72811681691352
1622902_at 8.27905313801143
1622903_s_at 8.22608650662566
1622904_at 4.91925901035247
1622905_at 3.30085640184402
1622906_at 8.52037519093085
1622907_at 8.61551322719933
1622908_a_at 9.78214980600869
1622909_at 9.74174229335657
1622910_at 3.2430781176222

Total number of rows: 18952

Table truncated, full table size 524 Kbytes.




Supplementary file Size Download File type/resource
GSM848336_DP19.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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