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Sample GSM848335 Query DataSets for GSM848335
Status Public on Apr 05, 2012
Title Adult_female_Df(2L)ED4559/+_Df(2R)ED1770/+
Sample type RNA
 
Source name Adult_female_Df(2L)ED4559/+_Df(2R)ED1770/+
Organism Drosophila melanogaster
Characteristics gender: female
age: adult (0-24hr)
genotype/variation: Df(2L)ED4559/+_Df(2R)ED1770/+
Treatment protocol Each sample, containing 15 adult female flies in age 0-24h, were collected and frozen in -70 ̊ C prior to RNA extraction
Growth protocol Flies were cultivated and crossed in vials with potato-yeast-agar medium at 25 ̊ C.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol reagent (Invitrogen) followed by a purification using RNeasy kit (Qiagen) according to the instruction by the suppliers.
Label biotin
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description DP18.CEL
Gene expression data from adult females
Data processing Raw data was normalized using RMA (R and Bioconductor).
 
Submission date Dec 13, 2011
Last update date Aug 28, 2018
Contact name Jan Larsson
E-mail(s) [email protected]
Organization name Umea University
Department Molecular Biology
Lab Jan Larsson
Street address Umea University
City Umea
ZIP/Postal code SE-90187
Country Sweden
 
Platform ID GPL1322
Series (1)
GSE34400 Buffering and proteolysis are induced upon segmental haploidy in Drosophila melanogaster.
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1616608_a_at 13.3184141388062
1622892_s_at 6.83899475596364
1622893_at 13.9528933983413
1622894_at 6.7118420109108
1622895_at 7.81072930627853
1622896_at 7.8411349315095
1622897_at 4.32591168716477
1622898_a_at 9.89594664617601
1622899_at 3.90276825068259
1622900_at 3.14541284589231
1622901_at 6.43389295232359
1622902_at 8.04389505839911
1622903_s_at 8.07275052039804
1622904_at 4.64844837079057
1622905_at 2.90588053096589
1622906_at 8.2440427548113
1622907_at 7.97222153018203
1622908_a_at 9.47038432472948
1622909_at 9.62524106980843
1622910_at 3.15473497084778

Total number of rows: 18952

Table truncated, full table size 524 Kbytes.




Supplementary file Size Download File type/resource
GSM848335_DP18.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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