GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM84331
Query DataSets for GSM84331
Status
Public on Nov 18, 2006
Title
R7E 4
Sample type
RNA
Source name
Retina
Organism
Mus musculus
Characteristics
Strain : 100% C57BL/6
Gender: Female
Age: 3 weeks (Onset stage)
Transgene: Mutant ataxin-7
Extracted molecule
total RNA
Label
Biotinylated cRNA
Description
NA
Data processing
MAS 5.0 algorithms - Global data normalization
Submission date
Nov 18, 2005
Last update date
Dec 01, 2005
Contact name
Gretta ABOU-SLEYMANE
E-mail(s)
[email protected]
Phone
00 33 3 88 65 34 13
Organization name
IGBMC
Street address
1 rue Laurent Fries
City
ILLKIRCH
ZIP/Postal code
67 404
Country
France
Platform ID
GPL339
Series (1)
GSE3634
Molecular pathways involved in neuronal degeneration of polyglutamine mouse models
Data table header descriptions
ID_REF
VALUE
MAS 5.0 signal intensity, a measure of transcript abundance
ABS_CALL
MAS 5.0 detection call, a flag that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the MAS 5.0 detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
49.2
P
0.006871
AFFX-BioB-M_at
59.6
P
0.002556
AFFX-BioB-3_at
35.6
P
0.004017
AFFX-BioC-5_at
102.8
P
0.000195
AFFX-BioC-3_at
65.0
P
0.000081
AFFX-BioDn-5_at
59.4
P
0.001248
AFFX-BioDn-3_at
489.9
P
0.000195
AFFX-CreX-5_at
844.6
P
0.000044
AFFX-CreX-3_at
1737.8
P
0.000044
AFFX-DapX-5_at
6.1
A
0.340661
AFFX-DapX-M_at
5.0
A
0.500000
AFFX-DapX-3_at
0.7
A
0.981719
AFFX-LysX-5_at
0.9
A
0.749204
AFFX-LysX-M_at
7.5
A
0.529760
AFFX-LysX-3_at
5.8
A
0.250796
AFFX-PheX-5_at
0.5
A
0.916408
AFFX-PheX-M_at
5.6
A
0.645547
AFFX-PheX-3_at
3.5
A
0.559354
AFFX-ThrX-5_at
1.5
A
0.868639
AFFX-ThrX-M_at
3.0
A
0.645547
Total number of rows:
22690
Table truncated, full table size
614 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
