|
| Status |
Public on Nov 15, 2024 |
| Title |
control patient, female, sampling age 73, ID=C838 |
| Sample type |
SRA |
| |
|
| Source name |
Blood
|
| Organism |
Homo sapiens |
| Characteristics |
patient group: control
tissue: Blood
Sex: female
bmi: 27.3
smoking habit: no
age at_sampling: 73
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using Maxwell® RSC 48 Instrument and Maxwell RSC miRNA Plasma and Serum Kit, including a DNase treatment.
RNA libraries for RNA-seq were prepared using Illumina Stranded Total RNA with Ribo-Zero Plus.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
C838
|
| Data processing |
FIMM-RNAseq 2.0.7 workflow
Assembly: hg38
Supplementary files format and content: tab-delimited text file containing raw counts for each Sample
|
| |
|
| Submission date |
Jul 30, 2024 |
| Last update date |
Nov 15, 2024 |
| Contact name |
Kai Kaarniranta |
| Organization name |
University of Eastern Finland
|
| Department |
Department of Ophthalmology
|
| Lab |
Kaarniranta Lab
|
| Street address |
Yliopistonrinne 3
|
| City |
Kuopio |
| ZIP/Postal code |
70211 |
| Country |
Finland |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE273435 |
Oxidative Stress and Inflammation-Related mRNAs Are Elevated in Serum of a Finnish Wet Age-Related Macular Degeneration Cohort |
|
| Relations |
| BioSample |
SAMN42913974 |
| SRA |
SRX25513330 |
