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GEO accession:
Sample GSM82996
Query DataSets for GSM82996
Status
Public on Nov 11, 2005
Title
C3H 8-3.1 Spleen
Sample type
RNA
Source name
Spleen
Organism
Mus musculus
Characteristics
C3H/HeJ
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated as described in Sandberg et al. PNAS 2000. via TRIzol and Qiagen RNeasy Mini Kit Protocols
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Wild type inbred mice
Data processing
Affymetrix TeraGenomics
Submission date
Nov 10, 2005
Last update date
Nov 10, 2005
Contact name
Matthew A Zapala
E-mail(s)
[email protected]
Phone
858-822-6712
Organization name
Salk Intitute for Biological Sciences
Department
Genetics
Lab
Carrolee Barlow
Street address
10010 N. Torrey Pines Road
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL81
Series (1)
GSE3594
Adult Mouse Brain Gene Expression
Data table header descriptions
ID_REF
VALUE
TeraGenomics-calculated Signal intensity
ABS CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE
'detection p-value', negative log of the p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS CALL
DETECTION P-VALUE
100001_at
130.2
P
0.001
100002_at
14.42
A
0.851
100003_at
42.14
P
0.010
100004_at
120.67
P
0.003
100005_at
184.64
P
0.000
100006_at
11.67
P
0.020
100007_at
315.24
P
0.001
100009_r_at
2.81
A
0.407
100010_at
219.58
P
0.000
100011_at
312.91
P
0.001
100012_at
2485.04
P
0.000
100013_at
264.01
P
0.001
100014_at
87.71
P
0.005
100015_at
31.35
A
0.135
100016_at
46.43
P
0.071
100017_at
21.42
A
0.234
100018_at
108.15
M
0.110
100019_at
3.88
A
0.355
100020_at
286.92
P
0.001
100021_at
-0.2
A
0.813
Total number of rows:
12488
Table truncated, full table size
294 Kbytes
.
Supplementary data files not provided
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