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GEO accession:
Sample GSM82977
Query DataSets for GSM82977
Status
Public on Nov 11, 2005
Title
B6:16-5 midbrain-thalamus
Sample type
RNA
Source name
Midbrain-Thalamus
Organism
Mus musculus
Characteristics
C57BL/6J
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated as described in Sandberg et al. PNAS 2000. via TRIzol and Qiagen RNeasy Mini Kit Protocols
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Wild type inbred mice
Data processing
Affymetrix TeraGenomics
Submission date
Nov 10, 2005
Last update date
Nov 10, 2005
Contact name
Matthew A Zapala
E-mail(s)
[email protected]
Phone
858-822-6712
Organization name
Salk Intitute for Biological Sciences
Department
Genetics
Lab
Carrolee Barlow
Street address
10010 N. Torrey Pines Road
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL81
Series (1)
GSE3594
Adult Mouse Brain Gene Expression
Data table header descriptions
ID_REF
VALUE
TeraGenomics-calculated Signal intensity
ABS CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE
'detection p-value', negative log of the p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS CALL
DETECTION P-VALUE
100001_at
14.04
A
0.724
100002_at
642
P
0.001
100003_at
17.42
A
0.501
100004_at
112.98
M
0.044
100005_at
98.95
P
0.005
100006_at
36.61
P
0.002
100007_at
362.93
P
0.001
100009_r_at
341.66
P
0.000
100010_at
28.59
P
0.056
100011_at
83.26
P
0.001
100012_at
200.72
P
0.002
100013_at
-1.31
A
0.324
100014_at
135.6
P
0.010
100015_at
20.89
M
0.063
100016_at
18.59
A
0.501
100017_at
35.21
A
0.234
100018_at
118.01
M
0.214
100019_at
35.25
P
0.079
100020_at
424.81
P
0.001
100021_at
14.38
A
0.575
Total number of rows:
12488
Table truncated, full table size
294 Kbytes
.
Supplementary data files not provided
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