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GEO accession:
Sample GSM82971
Query DataSets for GSM82971
Status
Public on Nov 11, 2005
Title
B6:19-9 pons
Sample type
RNA
Source name
Pons
Organism
Mus musculus
Characteristics
C57BL/6J
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated as described in Sandberg et al. PNAS 2000. via TRIzol and Qiagen RNeasy Mini Kit Protocols
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Wild type inbred mice
Data processing
Affymetrix TeraGenomics
Submission date
Nov 10, 2005
Last update date
Nov 10, 2005
Contact name
Matthew A Zapala
E-mail(s)
[email protected]
Phone
858-822-6712
Organization name
Salk Intitute for Biological Sciences
Department
Genetics
Lab
Carrolee Barlow
Street address
10010 N. Torrey Pines Road
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL81
Series (1)
GSE3594
Adult Mouse Brain Gene Expression
Data table header descriptions
ID_REF
VALUE
TeraGenomics-calculated Signal intensity
ABS CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE
'detection p-value', negative log of the p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS CALL
DETECTION P-VALUE
100001_at
7.77
A
0.724
100002_at
489.1
P
0.001
100003_at
8.72
A
0.871
100004_at
131.6
P
0.023
100005_at
97.09
P
0.004
100006_at
15.96
M
0.110
100007_at
410.42
P
0.001
100009_r_at
240.25
P
0.000
100010_at
18.37
A
0.575
100011_at
83.6
P
0.001
100012_at
155.58
P
0.026
100013_at
-2.44
A
0.537
100014_at
130.95
P
0.004
100015_at
17.53
A
0.501
100016_at
27.69
A
0.269
100017_at
52.04
M
0.135
100018_at
100.37
A
0.302
100019_at
6.79
A
0.724
100020_at
546.72
P
0.001
100021_at
5.81
A
0.955
Total number of rows:
12488
Table truncated, full table size
294 Kbytes
.
Supplementary data files not provided
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