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GEO accession:
Sample GSM82949
Query DataSets for GSM82949
Status
Public on Nov 11, 2005
Title
B6:2-4 retina
Sample type
RNA
Source name
Retina
Organism
Mus musculus
Characteristics
C57BL/6J
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated as described in Sandberg et al. PNAS 2000. via TRIzol and Qiagen RNeasy Mini Kit Protocols
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Wild type inbred mice
Data processing
Affymetrix TeraGenomics
Submission date
Nov 10, 2005
Last update date
Nov 10, 2005
Contact name
Matthew A Zapala
E-mail(s)
[email protected]
Phone
858-822-6712
Organization name
Salk Intitute for Biological Sciences
Department
Genetics
Lab
Carrolee Barlow
Street address
10010 N. Torrey Pines Road
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL81
Series (1)
GSE3594
Adult Mouse Brain Gene Expression
Data table header descriptions
ID_REF
VALUE
TeraGenomics-calculated Signal intensity
ABS CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE
'detection p-value', negative log of the p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS CALL
DETECTION P-VALUE
100001_at
21.91
A
0.501
100002_at
22.31
A
0.275
100003_at
20.58
A
0.832
100004_at
159.77
M
0.087
100005_at
152.58
P
0.030
100006_at
35.95
P
0.030
100007_at
527.53
P
0.001
100009_r_at
310.77
P
0.000
100010_at
8.73
A
0.832
100011_at
88.25
P
0.006
100012_at
57.76
A
0.603
100013_at
-10.46
A
0.257
100014_at
115.24
P
0.020
100015_at
92.78
P
0.020
100016_at
41.41
A
0.324
100017_at
94.63
P
0.063
100018_at
143.57
A
0.275
100019_at
1.57
A
0.437
100020_at
211.39
P
0.026
100021_at
5.15
A
0.794
Total number of rows:
12488
Table truncated, full table size
295 Kbytes
.
Supplementary data files not provided
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