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GEO accession:
Sample GSM82918
Query DataSets for GSM82918
Status
Public on Nov 11, 2005
Title
129 16:4-6 CA3
Sample type
RNA
Source name
Hippocampus CA3
Organism
Mus musculus
Characteristics
129S6/SvEvTac
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated as described in Sandberg et al. PNAS 2000. via TRIzol and Qiagen RNeasy Mini Kit Protocols
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Wild type inbred mice
Data processing
Affymetrix TeraGenomics
Submission date
Nov 10, 2005
Last update date
Nov 10, 2005
Contact name
Matthew A Zapala
E-mail(s)
[email protected]
Phone
858-822-6712
Organization name
Salk Intitute for Biological Sciences
Department
Genetics
Lab
Carrolee Barlow
Street address
10010 N. Torrey Pines Road
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL81
Series (1)
GSE3594
Adult Mouse Brain Gene Expression
Data table header descriptions
ID_REF
VALUE
TeraGenomics-calculated Signal intensity
ABS CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE
'detection p-value', negative log of the p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS CALL
DETECTION P-VALUE
100001_at
26.92
A
0.759
100002_at
67.53
M
0.049
100003_at
56.48
A
0.257
100004_at
106.78
M
0.049
100005_at
106.54
P
0.023
100006_at
97.91
P
0.000
100007_at
414.12
P
0.001
100009_r_at
610.1
P
0.000
100010_at
93.71
P
0.008
100011_at
184.15
P
0.000
100012_at
244.43
P
0.011
100013_at
4.91
A
0.676
100014_at
107.78
P
0.020
100015_at
22.85
A
0.324
100016_at
38.48
A
0.794
100017_at
70.83
A
0.162
100018_at
165.39
A
0.120
100019_at
38.72
M
0.098
100020_at
153.59
P
0.015
100021_at
22.56
A
0.832
Total number of rows:
12488
Table truncated, full table size
295 Kbytes
.
Supplementary data files not provided
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