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GEO accession:
Sample GSM82894
Query DataSets for GSM82894
Status
Public on Nov 11, 2005
Title
DBA 3:3-4 CA1
Sample type
RNA
Source name
Hippocampus CA1
Organism
Mus musculus
Characteristics
DBA/2J
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated as described in Sandberg et al. PNAS 2000. via TRIzol and Qiagen RNeasy Mini Kit Protocols
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Wild type inbred mice
Data processing
Affymetrix TeraGenomics
Submission date
Nov 10, 2005
Last update date
Nov 10, 2005
Contact name
Matthew A Zapala
E-mail(s)
[email protected]
Phone
858-822-6712
Organization name
Salk Intitute for Biological Sciences
Department
Genetics
Lab
Carrolee Barlow
Street address
10010 N. Torrey Pines Road
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL81
Series (1)
GSE3594
Adult Mouse Brain Gene Expression
Data table header descriptions
ID_REF
VALUE
TeraGenomics-calculated Signal intensity
ABS CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS CALL
DETECTION P-VALUE
100001_at
6.29
A
0.575
100002_at
186.28
P
0.005
100003_at
77.55
P
0.008
100004_at
54.85
A
0.437
100005_at
157.8
P
0.030
100006_at
55.95
P
0.026
100007_at
359.08
P
0.001
100009_r_at
466.74
P
0.001
100010_at
48.72
A
0.676
100011_at
141.05
M
0.034
100012_at
269.68
M
0.063
100013_at
-14.15
A
0.275
100014_at
106.47
P
0.063
100015_at
69.09
P
0.071
100016_at
56.24
A
0.575
100017_at
58.25
A
0.759
100018_at
75.57
A
0.955
100019_at
9.84
A
0.603
100020_at
196.97
A
0.355
100021_at
31.53
A
0.380
Total number of rows:
12488
Table truncated, full table size
296 Kbytes
.
Supplementary data files not provided
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