|
| Status |
Public on Nov 20, 2024 |
| Title |
M_2_2_1_6 |
| Sample type |
SRA |
| |
|
| Source name |
liver
|
| Organism |
Mus musculus |
| Characteristics |
strain: A/J mouse
tissue: liver
diet: Control
smoking: Yes
age: 10 – 11 weeks
gender: Female
weight: 18 - 22 g
|
| Treatment protocol |
kava was given via gavage for C57BL mice and in diet for A/J mice
|
| Growth protocol |
Mice were maintained under standard rodent housing conditions
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted via standard RNA isolation kit
Novogene standard protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Sequence reads were mapped to GrCM38/mm10 using HISAT2 for alignment
Picard for count deduplication
HTSeq for extract count
Lowly expressed genes were filtered out using mean of log(cpm+1) < 1
Assembly: mm10
Supplementary files format and content: comma-separated values file includes count values for both lung and liver tissue samples
|
| |
|
| Submission date |
May 19, 2024 |
| Last update date |
Nov 20, 2024 |
| Contact name |
Chengguo Xing |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Florida
|
| Street address |
1345 Center Drive
|
| City |
Gainesville |
| State/province |
FL |
| ZIP/Postal code |
32610 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE267842 |
The potential global neutralizing effects of AB-free kava against cigarette smoke exposure in mice |
|
| Relations |
| BioSample |
SAMN41452273 |
| SRA |
SRX24603893 |
