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Sample GSM825440 Query DataSets for GSM825440
Status Public on Nov 02, 2011
Title WFS1 KO USHT_01_337_wt
Sample type RNA
 
Source name hypothalamus
Organism Mus musculus
Characteristics genetic background: 129SV
genotype: WFS1 KO
tissue: hypothalamus
Treatment protocol Hypothalami were dissected under dissection microscope
Growth protocol Frozen in liquid nitrogen
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 100 ng Total RNA Labeling protocol, whole transcript sense target labeling assay
 
Hybridization protocol 25 ng/ul fragmented and labeled DNA target was hybridized according to standard protocols
Scan protocol GeneChips were scanned using the Affymetrix Scanner 3000.
Description Gene expression data from hypothalamus of wfs1 deficient mice
Data processing Images were processed using the Affymetrix Microarray Suite 5.0, cel files were normalized with RMA and further analyzed using Bioconductir software based on R language
 
Submission date Nov 01, 2011
Last update date Nov 02, 2011
Contact name Sulev Koks
E-mail(s) [email protected]
Phone +61864570313
Organization name Murdoch University
Department Centre for Molecular Medicine and Innovative Therapeutics
Street address 90 South Street
City Perth
State/province Western Australia
ZIP/Postal code 6150
Country Australia
 
Platform ID GPL6246
Series (1)
GSE33372 Hypothalamic gene expression profile indicates a reduction in G-protein signaling in the wfs1 mutant mice

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
10338001 12.83
10338003 11.17
10338004 10.13
10338017 13.63
10338025 9.81
10338026 13.99
10338029 10.34
10338035 9.85
10338036 10.42
10338037 4.79
10338041 11.86
10338042 11.05
10338044 12.82
10338047 6.99
10338056 4.37
10338059 13.95
10338060 4.54
10338063 4.52
10338064 6.47
10338065 6.86

Total number of rows: 34760

Table truncated, full table size 477 Kbytes.




Supplementary file Size Download File type/resource
GSM825440_USHT_01_337_wt.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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