|
| Status |
Public on Nov 28, 2024 |
| Title |
mESC_Snord90_KO |
| Sample type |
SRA |
| |
|
| Source name |
Mouse embryonic stem cells
|
| Organism |
Mus musculus |
| Characteristics |
cell line: Mouse embryonic stem cells
cell type: Mouse embryonic stem cells
genotype: Snord90 KO
treatment: none
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using TRIzol.
dRNA libraries were done following ONT instruction manuals.
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
MinION |
| |
|
| Data processing |
Basecalling using Guppy.
Demultiplexing using deeplexicon.
Mapping using graphmap.
Assembly: Mouse and human rRNA fasta.
Supplementary files format and content: EpiNano output with basecalling errors per-site, corresponding to the RNA modification levels.
|
| |
|
| Submission date |
Apr 23, 2024 |
| Last update date |
Nov 28, 2024 |
| Contact name |
Ivan Milenkovic |
| E-mail(s) |
[email protected]
|
| Organization name |
Centre for Genomic Regulation
|
| Street address |
Dr. Aiguader 88
|
| City |
Barcelona |
| State/province |
Catalonia |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platform ID |
GPL24973 |
| Series (1) |
| GSE264668 |
Epitranscriptomic rRNA fingerprinting reveals tissue-of-origin and tumor-specific signatures |
|
| Relations |
| BioSample |
SAMN41059781 |
| SRA |
SRX24345398 |
