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Sample GSM8225275 Query DataSets for GSM8225275
Status Public on Nov 28, 2024
Title NPC_rep2
Sample type SRA
 
Source name NPC
Organism Mus musculus
Characteristics cell line: NPC
cell type: NPC
genotype: WT
treatment: none
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzol.
dRNA libraries were done following ONT instruction manuals.
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model MinION
 
Data processing Basecalling using Guppy.
Demultiplexing using deeplexicon.
Mapping using graphmap.
Assembly: Mouse and human rRNA fasta.
Supplementary files format and content: EpiNano output with basecalling errors per-site, corresponding to the RNA modification levels.
 
Submission date Apr 23, 2024
Last update date Nov 28, 2024
Contact name Ivan Milenkovic
E-mail(s) [email protected]
Organization name Centre for Genomic Regulation
Street address Dr. Aiguader 88 ​
City Barcelona
State/province Catalonia
ZIP/Postal code 08003
Country Spain
 
Platform ID GPL24973
Series (1)
GSE264668 Epitranscriptomic rRNA fingerprinting reveals tissue-of-origin and tumor-specific signatures
Relations
BioSample SAMN41059785
SRA SRX24345394

Supplementary file Size Download File type/resource
GSM8225275_NPC_rep2.csv.gz 158.8 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA

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