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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 27, 2024 |
| Title |
LDB1_AID_clone1_rep2 |
| Sample type |
SRA |
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| Source name |
G1E-ER4
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| Organism |
Mus musculus |
| Characteristics |
cell line: G1E-ER4
cell type: Erythroblast
genotype: LDB1-AID-clone1
treatment: Untreated
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted from cells using the RNeasy Mini Kit (QIAGEN, 74104). Geneomic DNA was removed using QiAshredder (QIAGEN, 79656) and on-column digestion with RNAse-free DNAse.
Libraries were constructed using the TruSeq Stranded mRNA kit (Illumina, 20020594)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
NextSeq 2000 |
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| Data processing |
Data processed using the ENCODE3 long RNA-Seq pipeline (https://www.encodeproject.org/pipelines/ENCPL002LPE/)
Assembly: mm9
Supplementary files format and content: bw: tracks of RNA-seq signals
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| Submission date |
Apr 19, 2024 |
| Last update date |
Nov 27, 2024 |
| Contact name |
Nicholas Aboreden |
| E-mail(s) |
[email protected]
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| Organization name |
University of Pennsylvania
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| Lab |
Blobel Lab
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| Street address |
3615 Civic Center Blvd
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| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Platform ID |
GPL30172 |
| Series (1) |
| GSE264455 |
Ldb1 establishes multi-enhancer networks to regulate gene expression [RNA-seq] |
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| Relations |
| BioSample |
SAMN41021552 |
| SRA |
SRX24313568 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8218509_LDB1_AID_clone1_rep2_minus_strand.bw |
83.9 Mb |
(ftp)(http) |
BW |
| GSM8218509_LDB1_AID_clone1_rep2_plus_strand.bw |
85.5 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
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