|
| Status |
Public on Mar 21, 2012 |
| Title |
Lung adenocarcinoma 06L54_T (expression) |
| Sample type |
RNA |
| |
|
| Source name |
Lung adenocarcinoma
|
| Organism |
Homo sapiens |
| Characteristics |
type: Lung adenocarcinoma
batch: Batch 2
sample id: T28
tissue source: nci-edrn
bisulfite plate: 32
beadchip: 4
beadstrip: E
bisulfite alu: 15.21092
age: 73
tissue: Lung tumor
gender: Male
ethnicity: White
pack years: 110
smoking status: Current
Stage: Stage IA
recurrence: No
kras mutation status: WT
egfr mutation status: WT
lkb1 mutation status: WT
kras mutation type: WT
subject: 06L54
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was obtained by Trizol extraction from microdissected alternate sections of frozen tissue
|
| Label |
biotin
|
| Label protocol |
Standard illumina protocol performed at UT Southwestern Genomics Core
|
| |
|
| Hybridization protocol |
Standard illumina protocol performed at UT Southwestern Genomics Core
|
| Scan protocol |
Standard illumina protocol performed at UT Southwestern Genomics Core
|
| Data processing |
Data was processed by log2-transformation and Robust Spline Normalization (RSN) using the lumi package in R (Du et al 2008).
|
| |
|
| Submission date |
Oct 11, 2011 |
| Last update date |
Mar 21, 2012 |
| Contact name |
Ite Laird-Offringa |
| E-mail(s) |
[email protected]
|
| Phone |
(323) 865-0655
|
| Fax |
(323) 865-0158
|
| Organization name |
University of Southern California
|
| Department |
Biochemistry
|
| Lab |
Ite Laird-Offringa
|
| Street address |
1441 Eastlake Avenue, Suite 6420
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90089 |
| Country |
USA |
| |
|
| Platform ID |
GPL6884 |
| Series (2) |
| GSE32863 |
Gene expression analysis of lung adenocarcinoma and matched adjacent non-tumor lung tissue |
| GSE32867 |
DNA methylation and gene expression in lung adenocarcinoma |
|
