|
| Status |
Public on Nov 01, 2024 |
| Title |
deltacoaX pMV coaX sample 2 |
| Sample type |
SRA |
| |
|
| Source name |
H37Rv
|
| Organism |
Mycobacterium tuberculosis |
| Characteristics |
cell line: H37Rv
genotype: deltacoaX pMV coaX
|
| Extracted molecule |
total RNA |
| Extraction protocol |
R. A. Festa et al., A novel copper-responsive regulon in Mycobacterium tuberculosis. Mol Microbiol 79, 133-148 (2011).
Ribozero plus
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Reads were mapped to the H37Rv genome (RefSeq identifier GCF_000195955.2 with socAB annotation added as previously described (Limon et al. 2023)) using Bowtie2 v2.4.1 and sorted using samtools v1.13. Aligned read counts for each gene were extracted using the featureCounts command in Subread v2.0.1.
Assembly: GCF_000195955.2
Supplementary files format and content: featureCounts.tsv - tab separated table of read counts per gene
|
| |
|
| Submission date |
Mar 04, 2024 |
| Last update date |
Nov 01, 2024 |
| Contact name |
Shoshanna Celia Kahne |
| E-mail(s) |
[email protected]
|
| Organization name |
New York University Grossman School of Medicine
|
| Department |
Microbiology
|
| Lab |
Heran Darwin
|
| Street address |
430 E 29th Street, Lab 324 C-D
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10016 |
| Country |
USA |
| |
|
| Platform ID |
GPL27507 |
| Series (1) |
| GSE260838 |
Identification of a depupylation regulator for an essential enzyme in Mycobacterium tuberculosis |
|
| Relations |
| BioSample |
SAMN40254534 |
| SRA |
SRX23829937 |
