 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Apr 01, 2024 |
| Title |
ENT_27AC1 |
| Sample type |
SRA |
| |
|
| Source name |
HNT34
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HNT34
antibody: 27AC
treatment: ENT
|
| Treatment protocol |
Samples were treated for 24 hours with AR-42 0.8uM, entinostat 4uM, or DMSO vehicle
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
ActiveMotif ChIP IT® Express (ActiveMotif, Carlsbad, CA, USA, #53008)
NEBNext® Ultra™ II DNA Library Prep Kit (#E7645, New England Biolabs, Ipswich, MA)
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
nfcore ChIP pipeline (version 2.0.0)
MACS2 for peak calling
HOMER for annotation of peaks
Assembly: hg19
Supplementary files format and content: bigwig
|
| |
|
| Submission date |
Feb 20, 2024 |
| Last update date |
Apr 01, 2024 |
| Contact name |
Andrea Gherli |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Parma
|
| Department |
Medicine and Surgery
|
| Lab |
Translational Hematology and Chemogenomics
|
| Street address |
Via Gramsci 14
|
| City |
Parma |
| ZIP/Postal code |
43124 |
| Country |
Italy |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE256129 |
Orthogonal proteogenomic approaches identify the druggable PA2G4-MYC axis in 3q26 AML [ChIP-seq] |
|
| Relations |
| BioSample |
SAMN40007580 |
| SRA |
SRX23677894 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8086184_ENT_H3K27AC_REP1.bigWig |
342.7 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
