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Sample GSM80521

Query DataSets for GSM80521

Status

Public on Dec 01, 2005

Title

OSCE-18N

Sample type

RNA

Source name

Oral Squamous Cell Epithelium Tissue

Organism

Homo sapiens

Characteristics

Oral Squamous cell Epithelium Tissue-Normal
Patient Code:OSCC-18
Primary Site:Floor of Mouth
Age:52
Sex:M
TNM:T4N2M0

Abbreviation:TNM,Tumor-node-metastasis

Extracted molecule

total RNA

Label

Biotin

Description

Series of 4 Normals

Data processing

The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.

Submission date

Oct 28, 2005

Last update date

Nov 09, 2005

Contact name

Gokce Toruner

E-mail(s)

[email protected]

Phone

973-854-3456

Organization name

UMDNJ-NJ Medical School

Department

Center for Human and Molecular Genetics

Lab

Center for Applied Genomics

Street address

225 Warren Street W410Q

City

Newark

State/province

ZIP/Postal code

07103

Country

USA

Platform ID

GPL96

Series (1)

GSE3524

Association b/w gene expression profile & tumor invasion in OSCC

Data table header descriptions
ID_REF
VALUE	Prescaled data normalized by using the normalization steps “per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.

Data table
ID_REF	VALUE
213574_s_at	1.421
213573_at	1.224
213578_at	0.434
204342_at	0.834
213572_s_at	0.997
213567_at	1.396
213564_x_at	0.333
204348_s_at	1.579
213571_s_at	0.928
213554_s_at	1.225
213612_x_at	1.081
213594_x_at	0.84
213614_x_at	1.264
204326_x_at	2.249
213593_s_at	1.504
213588_x_at	1.056
213583_x_at	1.17
204333_s_at	1.483
204334_at	0.732
204367_at	0.861

Total number of rows: 14119

Table truncated, full table size 232 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM80521.CEL.gz	3.3 Mb	(ftp)(http)	CEL