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Status
Public on Oct 22, 2005
Title
HA98-146B
Sample type
RNA
Source name
Frontal cortex brain tissue from HIVE patient
Organism
Homo sapiens Characteristics
Tissue: brain (frontal cortex)
Extracted molecule
total RNA
Label
Biotin
Description
Full description found in Eliezer Masiliah, Eleanor S. Roberts, Dianne Langford, Ian Everall, Leslie Crews, Anthony Adame, Edward Rockenstein, and Howard S. Fox. (2004) Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis.
Data processing
MAS5.0
Submission date
Oct 20, 2005
Last update date
Mar 16, 2009
Contact name
Jennifer A Hammond
E-mail(s)
[email protected] Phone
(858) 784-2263
Fax
(858) 784-2754
URL
http://www.scripps.edu/researchservices/dna_array/ Organization name
The Scripps Research Institute
Lab
DNA Array Core Facility
Street address
10550 N. Torrey Pines Rd.
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platform ID
GPL8300 Series (1)
GSE3489 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-MurIL2_at
62
A
0.39692
AFFX-MurIL10_at
9.5
A
0.772364
AFFX-MurIL4_at
20.6
A
0.5
AFFX-MurFAS_at
15.4
A
0.440646
AFFX-BioB-5_at
587.5
P
0.002275
AFFX-BioB-M_at
1355.5
P
0.000258
AFFX-BioB-3_at
797
P
0.001248
AFFX-BioC-5_at
1979.7
P
0.000044
AFFX-BioC-3_at
1617.5
P
0.000044
AFFX-BioDn-5_at
1845.5
P
0.000147
AFFX-BioDn-3_at
7133.4
P
0.000044
AFFX-CreX-5_at
18005.5
P
0.000044
AFFX-CreX-3_at
21683.3
P
0.000044
AFFX-BioB-5_st
90.3
A
0.368438
AFFX-BioB-M_st
38.4
A
0.574038
AFFX-BioB-3_st
25.2
A
0.916408
AFFX-BioC-5_st
24.1
A
0.60308
AFFX-BioC-3_st
54.5
A
0.48511
AFFX-BioDn-5_st
108.1
A
0.185131
AFFX-BioDn-3_st
142.7
A
0.156732
12625 313 Kbytes .Supplementary data files not provided
