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Sample GSM7810364 Query DataSets for GSM7810364
Status Public on Oct 03, 2023
Title S. mutans WT-3
Sample type SRA
 
Source name bacteria cell
Organism Streptococcus mutans
Characteristics strain: wild-type
Growth protocol Cells were grown to late-exponential phase (OD600=0.6~0.7) in brain heart infusion (BHI) medium (BD Biosciences, New Jersey, USA) at 37℃ in 5% CO2 condition.
Extracted molecule total RNA
Extraction protocol RNA was extracted using RNeasy Mini Kit (Qiagen). 1 μg of each RNA was used to construct the cDNA library.
cDNA libraries were prepared for sequencing using a Novaseq 6000 protocol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing Raw data of RNA-seq results were mapped to reference genome (S. mutans UA159) using NCBI gene.
Data processing was carried out through e-biogen (www.e-biogen.com), an outsourcing company.
 
Submission date Sep 28, 2023
Last update date Oct 04, 2023
Contact name Ryoo SiUk
E-mail(s) [email protected]
Organization name Pusan univ.
Department Microbiology
Lab Infection biology
Street address busandaehakro 63-2
City Busan
ZIP/Postal code 616120
Country South Korea
 
Platform ID GPL32247
Series (1)
GSE244268 Transcriptome analysis of Streptococcus mutans ΔSMU.1147 strain
Relations
BioSample SAMN37595801
SRA SRX21924126

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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