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Status |
Public on Oct 03, 2023 |
Title |
S. mutans WT-3 |
Sample type |
SRA |
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Source name |
bacteria cell
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Organism |
Streptococcus mutans |
Characteristics |
strain: wild-type
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Growth protocol |
Cells were grown to late-exponential phase (OD600=0.6~0.7) in brain heart infusion (BHI) medium (BD Biosciences, New Jersey, USA) at 37℃ in 5% CO2 condition.
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Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted using RNeasy Mini Kit (Qiagen). 1 μg of each RNA was used to construct the cDNA library. cDNA libraries were prepared for sequencing using a Novaseq 6000 protocol
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
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Data processing |
Raw data of RNA-seq results were mapped to reference genome (S. mutans UA159) using NCBI gene. Data processing was carried out through e-biogen (www.e-biogen.com), an outsourcing company.
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Submission date |
Sep 28, 2023 |
Last update date |
Oct 04, 2023 |
Contact name |
Ryoo SiUk |
E-mail(s) |
[email protected]
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Organization name |
Pusan univ.
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Department |
Microbiology
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Lab |
Infection biology
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Street address |
busandaehakro 63-2
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City |
Busan |
ZIP/Postal code |
616120 |
Country |
South Korea |
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Platform ID |
GPL32247 |
Series (1) |
GSE244268 |
Transcriptome analysis of Streptococcus mutans ΔSMU.1147 strain |
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Relations |
BioSample |
SAMN37595801 |
SRA |
SRX21924126 |
Supplementary data files not provided |
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Raw data are available in SRA |
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