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Sample GSM74981 Query DataSets for GSM74981
Status Public on Oct 23, 2005
Title FVB/NJ hypothalamus rep2
Sample type RNA
 
Source name hypothalamus
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol hypothalami were dissected from one FVB/NJ mouse under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male FVB/NJ mouse hypothalamus
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 26.27 A 0.3
100002_at 1542.15 P 3.36
100003_at 26.57 A 0.42
100004_at 86.6 A 0.92
100005_at 127.57 M 1.31
100006_at 47.29 P 2.49
100007_at 416.19 P 3.36
100009_r_at 724.65 P 3.36
100010_at 29.33 M 1.01
100011_at 71.25 P 3.36
100012_at 140.33 M 1.31
100013_at 18.36 A 0.08
100014_at 123.43 P 1.88
100015_at 66.5 P 1.36
100016_at 46.96 A 0.75
100017_at 72.17 P 1.41
100018_at 174.98 M 0.96
100019_at 38.21 M 1.31
100020_at 188.73 P 2.28
100021_at 6.22 A 0

Total number of rows: 12488

Table truncated, full table size 282 Kbytes.




Supplementary file Size Download File type/resource
GSM74981.CEL.gz 2.8 Mb (ftp)(http) CEL
GSM74981.EXP.gz 309 b (ftp)(http) EXP

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