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Sample GSM74978 Query DataSets for GSM74978
Status Public on Oct 23, 2005
Title DBA/2J hypothalamus rep1
Sample type RNA
 
Source name hypothalamus
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol hypothalami were dissected from two DBA/2J mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male DBA/2J mouse hypothalamus
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 24.2 A 0
100002_at 1672.72 P 3.36
100003_at 21.12 A 0.45
100004_at 86.5 M 0.49
100005_at 111.06 P 2.14
100006_at 45.7 P 2.79
100007_at 474.33 P 3.19
100009_r_at 900.83 P 3.36
100010_at 39.69 P 1.06
100011_at 84.03 P 2.87
100012_at 98.54 A 0.96
100013_at 5.38 A 0.49
100014_at 115.85 P 1.95
100015_at 37.58 P 1.25
100016_at 31.91 A 0.75
100017_at 56.02 P 1.25
100018_at 118.37 M 0.83
100019_at 36.88 M 1.2
100020_at 190.44 P 1.95
100021_at 13.74 A 0.1

Total number of rows: 12488

Table truncated, full table size 281 Kbytes.




Supplementary file Size Download File type/resource
GSM74978.CEL.gz 2.8 Mb (ftp)(http) CEL
GSM74978.EXP.gz 312 b (ftp)(http) EXP

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