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Sample GSM74963 Query DataSets for GSM74963
Status Public on Oct 23, 2005
Title DBA/2J hippocampus rep1
Sample type RNA
 
Source name hippocampus
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol Hippocampi were dissected from one DBA/2J mouse under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male DBA/2J mouse hippocampus
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 23.79 A 0.3
100002_at 120.32 P 2.42
100003_at 51.7 P 1.31
100004_at 89.19 A 0.59
100005_at 91.66 P 2.01
100006_at 103.69 P 3.36
100007_at 340.42 P 3.03
100009_r_at 451.77 P 3.36
100010_at 58.58 M 1.15
100011_at 105.55 P 3.03
100012_at 159.65 P 1.52
100013_at 12 A 0.14
100014_at 104.68 P 2.14
100015_at 27.79 A 0.63
100016_at 35.74 A 0.24
100017_at 67.31 P 1.52
100018_at 108.9 M 0.79
100019_at 18.67 A 0.63
100020_at 160.82 P 1.7
100021_at 18.89 A 0.14

Total number of rows: 12488

Table truncated, full table size 281 Kbytes.




Supplementary file Size Download File type/resource
GSM74963.CEL.gz 2.8 Mb (ftp)(http) CEL
GSM74963.EXP.gz 302 b (ftp)(http) EXP

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