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Sample GSM74961 Query DataSets for GSM74961
Status Public on Oct 23, 2005
Title C3H/HeJ hippocampus rep1
Sample type RNA
 
Source name hippocampus
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol Hippocampi were dissected from one C3H/HeJ mouse under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male C3H/HeJ mouse hippocampus
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 26.23 A 0.14
100002_at 149.46 P 2.49
100003_at 39.63 M 0.67
100004_at 84.63 A 0.79
100005_at 109.17 M 1.31
100006_at 125.23 P 3.36
100007_at 369.21 P 3.19
100009_r_at 610.56 P 3.36
100010_at 44.68 P 1.36
100011_at 106.97 P 3.19
100012_at 177.32 P 1.52
100013_at 1.71 A 0.36
100014_at 117.25 P 2.14
100015_at 37.23 A 0.42
100016_at 47.5 A 0.75
100017_at 60.36 P 1.31
100018_at 149.16 P 1.01
100019_at 23.83 A 0.75
100020_at 158.35 P 1.88
100021_at 24.16 A 0.33

Total number of rows: 12488

Table truncated, full table size 281 Kbytes.




Supplementary file Size Download File type/resource
GSM74961.CEL.gz 2.8 Mb (ftp)(http) CEL
GSM74961.EXP.gz 301 b (ftp)(http) EXP

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