NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM74933 Query DataSets for GSM74933
Status Public on Oct 23, 2005
Title C3H/HeJ bed nucleus of the stria terminalis rep1
Sample type RNA
 
Source name bed nucleus of the stria terminalis
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol bed nuclei of the stria terminalis were dissected from two C3H/HeJ mice under a dissection microscope. The samples were snap frozen and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male C3H/HeJ mouse bed nucleus of the stria terminalis
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 25.86 A 0.22
100002_at 703.38 P 3.36
100003_at 16.42 A 0.39
100004_at 59.61 P 1.25
100005_at 115.82 P 2.42
100006_at 43.53 P 3.11
100007_at 370.51 P 3.27
100009_r_at 636.96 P 3.36
100010_at 40.1 M 1.36
100011_at 90.39 P 3.03
100012_at 127.48 P 1.58
100013_at 14.43 A 0.1
100014_at 134.57 P 2.28
100015_at 28.61 P 1.41
100016_at 29.53 A 0.75
100017_at 49.09 P 1.41
100018_at 117.24 P 1.01
100019_at 30.07 M 1.06
100020_at 377.81 P 3.27
100021_at 4.54 A 0.06

Total number of rows: 12488

Table truncated, full table size 281 Kbytes.




Supplementary file Size Download File type/resource
GSM74933.CEL.gz 2.8 Mb (ftp)(http) CEL
GSM74933.EXP.gz 306 b (ftp)(http) EXP

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap