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Sample GSM74924 Query DataSets for GSM74924
Status Public on Oct 23, 2005
Title FVB/NJ amygdala rep2
Sample type RNA
 
Source name amygdala
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol Amygdalae were dissected from two FVB/NJ mice under a dissection microscope. The samples were frozen in the RNALater buffer and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 50 ng of total RNA was processed to produce biotinylated cRNA targets using two rounds of cDNA synthesis and in vitro transcription.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male FVB/NJ mouse amygdala
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 13.93 A 0
100002_at 343.58 P 2.49
100003_at 114.62 P 2.08
100004_at 75.63 A 0.63
100005_at 86.99 M 1.31
100006_at 52.34 P 3.27
100007_at 286.27 A 1.01
100009_r_at 2985.41 P 3.36
100010_at 5.82 A 0.3
100011_at 105.32 P 3.27
100012_at 156.86 A 0.1
100013_at -9.99 A 0.63
100014_at 67.99 P 1.31
100015_at 39.22 A 0.56
100016_at 49.66 M 0.96
100017_at 75.92 P 1.41
100018_at 71.92 A 0.27
100019_at 83.23 P 1.7
100020_at 140.31 M 1.15
100021_at 4.4 A 0.3

Total number of rows: 12488

Table truncated, full table size 282 Kbytes.




Supplementary file Size Download File type/resource
GSM74924.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM74924.EXP.gz 310 b (ftp)(http) EXP

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