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Sample GSM74918 Query DataSets for GSM74918
Status Public on Oct 23, 2005
Title C57BL/6J amygdala rep2
Sample type RNA
 
Source name amygdala
Organism Mus musculus
Characteristics Wild type 8 wk old male
Extracted molecule total RNA
Extraction protocol Amygdalae were dissected from two C57BL/6J mice under a dissection microscope. The samples were frozen in the RNALater buffer and stored at -80oC. Total RNA was extracted from the tissue using Trizol reagent (Invitrogen).
Label biotin
Label protocol 50 ng of total RNA was processed to produce biotinylated cRNA targets using two rounds of cDNA synthesis and in vitro transcription.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type 8 wk old male C57BL/6J mouse amygdala
Data processing Lockhart-Barlow expression analysis algorithm
 
Submission date Sep 19, 2005
Last update date Feb 27, 2007
Contact name Carrolee Barlow
Organization name The Salk Institute for Biological Studies
Street address 10010 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL81
Series (1)
GSE3327 Adult mouse gene expression

Data table header descriptions
ID_REF
VALUE Lockhart-Barlow expression analysis algorithm-calculated signal intensity
ABS CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or reverse present (RP)
DETECTION P-VALUE_LB 'detection p-value', negative log of the p-value from the Wilcoxon signed rank test, relative version that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS CALL DETECTION P-VALUE_LB
100001_at 15.96 A 0.12
100002_at 233.64 P 3.27
100003_at 64.23 P 2.14
100004_at 89.19 P 1.41
100005_at 37.27 A 0.59
100006_at 88.64 P 3.36
100007_at 250.43 P 2.64
100009_r_at 2935.95 P 3.36
100010_at 4.17 A 0.1
100011_at 78.43 P 2.57
100012_at 133.21 A 0.83
100013_at 2.72 A 0.33
100014_at 90.22 P 2.42
100015_at 51.73 A 0.83
100016_at 14.17 A 0.14
100017_at 65.04 P 1.47
100018_at 164.55 M 0.71
100019_at 134.61 P 2.64
100020_at 74.74 A 0.92
100021_at 8.45 A 0.12

Total number of rows: 12488

Table truncated, full table size 281 Kbytes.




Supplementary file Size Download File type/resource
GSM74918.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM74918.EXP.gz 305 b (ftp)(http) EXP

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