|
| Status |
Public on Mar 13, 2024 |
| Title |
Whole brain, 24m, rep 2 [ONT] |
| Sample type |
SRA |
| |
|
| Source name |
Whole brain
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Whole brain
Sex: Male
age: 24 months
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted from a total of 8 biological samples, corresponding to 4 young-adult samples (6-month, brain hemisphere, from 4 males), 4 aged (24-month, brain hemisphere, from 4 males). Raw data were procured from MiniON sequencing
NEBNext Ultra II directional polyA+
|
| |
|
| Library strategy |
ssRNA-seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
MinION |
| |
|
| Data processing |
RNA-seq reads were aligned to the GRCm39.103 genome assembly using minimap2 v2.24
Assembly: GRCm39.103
|
| |
|
| Submission date |
May 31, 2023 |
| Last update date |
Mar 13, 2024 |
| Contact name |
Nisha Hemandhar Kumar |
| E-mail(s) |
[email protected], [email protected], [email protected]
|
| Organization name |
University Medical Center Goettingen
|
| Department |
Institute for Neuro and Sensory Physiology
|
| Lab |
Dr. Eugenio F. Fornasiero
|
| Street address |
Humboldtallee 23
|
| City |
Göttingen |
| ZIP/Postal code |
37073 |
| Country |
Germany |
| |
|
| Platform ID |
GPL24973 |
| Series (2) |
| GSE233836 |
Detailed analysis of the murine-aged brain transcriptome [ONT] |
| GSE233837 |
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain |
|
| Relations |
| BioSample |
SAMN35546563 |
| SRA |
SRX20554640 |
