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Sample GSM74050 Query DataSets for GSM74050
Status Public on Sep 13, 2005
Title Aorta 3hours chip B
Sample type RNA
 
Source name Aorta
Organism Rattus norvegicus
Characteristics Aorta
Extracted molecule total RNA
Label Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, rev.3. 2001)
 
Description Isolation of rat DA and Ao. Rats were mated for 24 hours and the end of this period was marked as day zero of pregnancy. Near-term fetuses (gestational age, 19 days) were delivered by Cesarean section from a normoxic or hyperoxic dam, while newborns were used 3 hours after vaginal delivery. Pregnant rats were made hyperoxic to reproduce the neonatal condition in utero. They breathed 100% oxygen inside a box for 3 hours. All animals were killed by cervical dislocation and, to isolate the DA and Ao (arch and thoracic sections), were secured inside a chamber filled with ice-cold Krebs medium through which was bubbled a gas mixture with 2.5 (fetus) or 12.5% (newborn) oxygen. Special care was taken to obtain the blood vessels free of any adhering tissue.
Data processing Original Affymetrix output files
 
Submission date Sep 11, 2005
Last update date Sep 12, 2005
Contact name Flavio Coceani
E-mail(s) [email protected]
Phone +39 050 883327
Fax +39 050 883215
Organization name Scuola Superiore S. Anna
Department Settore di Scienze Mediche
Street address Piazza Martiri della Libertà, 33
City Pisa
ZIP/Postal code 56127
Country Italy
 
Platform ID GPL86
Series (1)
GSE3290 Expression profiling in perinatal Ductus Arteriosus (DA) and Aorta (Ao).

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL DETECTION
DETECTION P-VALUE detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 23.7 A 0.868639
AFFX-MurIL10_at 141.3 A 0.559354
AFFX-MurIL4_at 20.6 A 0.760937
AFFX-MurFAS_at 16.6 A 0.737173
AFFX-BioB-5_at 609.8 A 0.095667
AFFX-BioB-M_at 1040.2 P 0.000972
AFFX-BioB-3_at 467.2 P 0.010317
AFFX-BioC-5_at 2203.2 P 0.000258
AFFX-BioC-3_at 1384.5 P 0.00141
AFFX-BioDn-5_at 1578 P 0.000195
AFFX-BioDn-3_at 14218.5 P 0.000127
AFFX-CreX-5_at 19655.2 P 0.000044
AFFX-CreX-3_at 22125.7 P 0.000044
AFFX-BioB-5_st 229.2 A 0.185131
AFFX-BioB-M_st 178.3 A 0.52976
AFFX-BioB-3_st 55.3 A 0.834139
AFFX-BioC-5_st 29.7 A 0.960339
AFFX-BioC-3_st 33.5 A 0.824672
AFFX-BioDn-5_st 309 A 0.275146
AFFX-BioDn-3_st 393 A 0.108979

Total number of rows: 8791

Table truncated, full table size 271 Kbytes.




Supplementary data files not provided

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