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Sample GSM738163 Query DataSets for GSM738163
Status Public on Aug 01, 2011
Title muscle_control_rep5
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics age: 425d
Sex: M
strain: BALB/cByJ
tumor: control
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol Reagent, followed by Qiagen DNAse1 treatment according to manufacturer's protocol. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description GES07_0174
Data processing log2-transformed Illumina average intensity data followed by quantile normalization
 
Submission date Jun 07, 2011
Last update date Aug 01, 2011
Contact name Roger Sher
E-mail(s) [email protected]
Phone 207-288-6503
Fax 207-288-6077
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
ZIP/Postal code 04609
Country USA
 
Platform ID GPL6481
Series (1)
GSE29775 Rhabdomyosarcomas in aging A/J mice

Data table header descriptions
ID_REF
VALUE quantile normalized log2-transformed Illumina average intensity data
Detection Pval

Data table
ID_REF VALUE Detection Pval
10243 7.58698152 0.07485964
10280 7.53199917 0.0904554
10575 8.80750174 0.00374298
20048 7.56175741 0.07985028
20296 14.4600985 0
20343 7.4540485 0.1166563
20373 7.00683264 0.4990643
20431 14.1114704 0
50014 7.34596597 0.165315
50017 7.50487974 0.09794136
50019 12.0745812 0
50020 7.80701418 0.03555833
50022 6.96171988 0.5670618
50025 6.97185464 0.5545852
50026 7.18929701 0.279476
50035 7.1745868 0.2907049
50037 8.19657405 0.01185278
50039 11.6868543 0
50040 8.39818238 0.00810979
50041 10.3276086 0

Total number of rows: 46643

Table truncated, full table size 1303 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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