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Sample GSM737540 Query DataSets for GSM737540
Status Public on Jun 06, 2011
Title Wig-1 ASO Treatment rep1
Sample type RNA
 
Source name mouse brain
Organism Mus musculus
Characteristics strain: BACHD
age: 5-months-old
tissue: brain
treatment: Wig-1 antisense oligonucleotide (ASO)
Extracted molecule total RNA
Extraction protocol RNeasy mini kit (cat # 74106, Qiagen) was used to purify total RNA from animal tissues. Tissue was lysed and homogenized, precipitated with ethanol, washed, and then eluted in double distilled RNase free water.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description B1
Wig1 ASO replicate1
Data processing The data were normalised using quantile normalisation with lumi in R
 
Submission date Jun 06, 2011
Last update date Jun 06, 2011
Contact name Mahyar Sabripour
E-mail(s) [email protected]
Organization name Isis Pharmaceuticals
Street address 1896 Rutherford Ave.
City Carlsbad
State/province CA
ZIP/Postal code 92008
Country USA
 
Platform ID GPL6887
Series (1)
GSE29751 Genomic Analysis of wig-1 Pathways

Data table header descriptions
ID_REF
VALUE quantile normalized signal
B1.Detection Pval

Data table
ID_REF VALUE B1.Detection Pval
ILMN_1250052 2.864398543 0.018162394
ILMN_1251402 1.2450408 0.697649598
ILMN_3122480 1.14875963 0.825854719
ILMN_1230863 1.318325245 0.614316225
ILMN_2599935 6.231542481 0
ILMN_1249762 2.394346897 0.044871796
ILMN_2653194 10.64989397 0
ILMN_1227991 1.215367857 0.743589759
ILMN_2445236 2.408642144 0.044871796
ILMN_2675543 2.062751326 0.070512824
ILMN_2635314 1.088439621 0.889957249
ILMN_1212991 5.792348627 0
ILMN_2686883 1.295663654 0.172008544
ILMN_1223534 1.257744221 0.682692289
ILMN_2514305 1.201099473 0.775641024
ILMN_2751818 1.346348933 0.574786305
ILMN_1217583 1.487221955 0.23931624
ILMN_1222597 2.458050969 0.041666668
ILMN_1242561 2.086564785 0.067307696
ILMN_2728634 1.944448326 0.088675216

Total number of rows: 45281

Table truncated, full table size 1500 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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