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Sample GSM737538 Query DataSets for GSM737538
Status Public on Jun 06, 2011
Title PBS (no treatment) rep3
Sample type RNA
 
Source name mouse brain
Organism Mus musculus
Characteristics strain: BACHD
age: 5-months-old
tissue: brain
treatment: PBS
Extracted molecule total RNA
Extraction protocol RNeasy mini kit (cat # 74106, Qiagen) was used to purify total RNA from animal tissues. Tissue was lysed and homogenized, precipitated with ethanol, washed, and then eluted in double distilled RNase free water.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description A3
PBS replicate3
Data processing The data were normalised using quantile normalisation with lumi in R
 
Submission date Jun 06, 2011
Last update date Jun 06, 2011
Contact name Mahyar Sabripour
E-mail(s) [email protected]
Organization name Isis Pharmaceuticals
Street address 1896 Rutherford Ave.
City Carlsbad
State/province CA
ZIP/Postal code 92008
Country USA
 
Platform ID GPL6887
Series (1)
GSE29751 Genomic Analysis of wig-1 Pathways

Data table header descriptions
ID_REF
VALUE quantile normalized signal
A3.Detection Pval

Data table
ID_REF VALUE A3.Detection Pval
ILMN_1250052 3.441648234 0.001068376
ILMN_1251402 1.626026912 0.112179488
ILMN_3122480 1.298385198 0.604700863
ILMN_1230863 1.045920468 0.943376064
ILMN_2599935 6.142534087 0
ILMN_1249762 1.75765321 0.099358976
ILMN_2653194 10.54572958 0
ILMN_1227991 1.474827433 0.33547008
ILMN_2445236 3.222224655 0.003205128
ILMN_2675543 1.441132887 0.389957279
ILMN_2635314 1.072884294 0.905982912
ILMN_1212991 5.470085368 0
ILMN_2686883 1.437868089 0.395299137
ILMN_1223534 1.235699628 0.697649598
ILMN_2514305 1.671620311 0.106837608
ILMN_2751818 1.273577103 0.162393168
ILMN_1217583 1.325273636 0.568376064
ILMN_1222597 1.534522479 0.254273504
ILMN_1242561 2.098048191 0.055555556
ILMN_2728634 1.313374732 0.144230768

Total number of rows: 45281

Table truncated, full table size 1487 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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