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Sample GSM724961 Query DataSets for GSM724961
Status Public on Aug 18, 2011
Title NA19200_E_trep1
Sample type RNA
 
Source name lymphoblastoid cell line
Organism Homo sapiens
Characteristics cell type: EBV-transformed B lymphocytes
population: Yoruba in Ibadan, Nigeria
treatment: vehicle(EtOH)
lcl_id: NA19200
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy Plus mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description technical replicate 1
Data processing The data were normalised using quantile normalisation with lumi in R
 
Submission date May 17, 2011
Last update date Aug 18, 2011
Contact name Joseph C Maranville
E-mail(s) [email protected]
Phone 7738345239
Organization name 920 E. 58th Street
Street address 920 E. 58th Street
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL6947
Series (1)
GSE29342 Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection_pvalue

Data table
ID_REF VALUE Detection_pvalue
ILMN_2055271 8.42166044771989 0.1791831
ILMN_1806310 8.39230826746367 0.2529644
ILMN_2321282 8.52994566200479 0.06719368
ILMN_1717783 8.12322604101393 0.9815547
ILMN_1787689 8.40336931573328 0.2187088
ILMN_1745607 8.44651592835034 0.140975
ILMN_1735045 9.8401719386433 0
ILMN_1680754 8.45822424791103 0.1225296
ILMN_2375184 8.424657047003 0.1725955
ILMN_1659452 8.41746691823463 0.1844532
ILMN_1767388 8.31042239076483 0.455863
ILMN_1755321 9.2963677005575 0.001317523
ILMN_1698554 9.31852019432947 0.001317523
ILMN_1814092 8.65547429907917 0.02503294
ILMN_2061446 9.32430851966048 0.001317523
ILMN_1676336 9.5449746295454 0
ILMN_1688755 8.86690527916531 0.009222661
ILMN_1653165 10.2102912156231 0
ILMN_1662364 13.5932896814182 0
ILMN_1674698 9.89191447337992 0

Total number of rows: 24082

Table truncated, full table size 879 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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