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| Status |
Public on Dec 08, 2023 |
| Title |
control #6 |
| Sample type |
SRA |
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| Source name |
GWAT
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| Organism |
Mus musculus |
| Characteristics |
tissue: GWAT
Sex: male
age: postnatal day 16
genotype: C57BL/6J
treatment: control
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
Qiagen RNEasy Mini Prep kit
Lexogen quantseq
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Reads were mapped to mm10 using Salmon v1.9.0
Transcripts were mapped to the genes using EnsDb.Mmusculus.v79 and tximport
Removed genes with <10 reads across all samples
Differential expression performed using DESeq2 v1.36
Assembly: mm10
Supplementary files format and content: quant.sf file containing one row per transcript (ENSEMBLID), length, TPM and number of reads
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| Submission date |
Mar 14, 2023 |
| Last update date |
Dec 08, 2023 |
| Contact name |
Dave Bridges |
| E-mail(s) |
[email protected]
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| Phone |
7347641266
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| Organization name |
University of Michigan
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| Department |
Nutritional Sciences
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| Lab |
Bridges Lab
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| Street address |
1415 Washington Heights
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| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE227337 |
Lactational exposure to high fat diet |
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| Relations |
| BioSample |
SAMN33759539 |
| SRA |
SRX19675185 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM7098019_Sample_136912_quant.sf.gz |
1.0 Mb |
(ftp)(http) |
SF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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