GEO help: Mouse over screen elements for information.
Status
Public on Sep 20, 2005
Title
Dermal papilla replicate 1
Sample type
RNA
Source name
Skin
Organism
Mus musculus Characteristics
FACSorted skin cells, dermal papilla
Extracted molecule
total RNA
Extraction protocol
4 day old backskins were taken and Mx, ORS, DF, DP and Mc were FACSorted from Lef1-RFP/K14-H2BGFP mice. Total RNAs were prepared using the MicroPrep Kit (Stratagene)
Label
biotin
Label protocol
Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Hair follicle dermal papilla cells
Data processing
Affymetrix Microarray Suite version 5.0, scaled with the Affymetrix mask file to TGT=500
Submission date
Aug 16, 2005
Last update date
Sep 20, 2005
Contact name
Michael Rendl
E-mail(s)
[email protected] Organization name
Mount Sinai School of Medicine
Street address
1428 Madison Avenue
City
New York
State/province
NY
ZIP/Postal code
10029
Country
USA
Platform ID
GPL339 Series (1)
GSE3142 Molecular signatures in skin
Data table header descriptions ID_REF Affymetrix Identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE 1428299_at
182.9
P
0.001953
1431226_a_at
161.2
P
0.037598
1426662_at
293.3
P
0.000732
1419830_at
10.7
A
0.246094
1423763_x_at
5515.7
P
0.000244
1452718_at
1608
P
0.000244
1417020_at
7.6
A
0.303711
1425279_at
54
M
0.056152
1435301_at
8.9
A
0.969727
1437330_at
79.3
A
0.095215
1452940_x_at
63.9
P
0.00415
1460190_at
66.6
A
0.366211
1416810_at
196.3
P
0.00415
1451337_at
231.2
P
0.023926
1455605_at
77.8
P
0.000244
1433952_at
148
M
0.056152
1416225_at
47.8
A
0.19458
1418354_at
28.1
A
0.533936
1448668_a_at
235.7
P
0.000244
1437155_a_at
361.4
P
0.000244
22690 611 Kbytes .Supplementary file Size Download File type/resource GSM70242.CEL.gz
3.5 Mb
(ftp) (http) CEL
GSM70242.EXP.gz
363 b
(ftp) (http) EXP
