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Status
Public on Sep 20, 2005
Title
Outer root sheath 1
Sample type
RNA
Source name
Skin
Organism
Mus musculus Characteristics
FACSorted skin cells, outer root sheath
Extracted molecule
total RNA
Extraction protocol
4 day old backskins were taken and Mx, ORS, DF, DP and Mc were FACSorted from Lef1-RFP/K14-H2BGFP mice. Total RNAs were prepared using the MicroPrep Kit (Stratagene)
Label
biotin
Label protocol
Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Hair follicle outer root sheath cells
Data processing
Affymetrix Microarray Suite version 5.0, scaled with the Affymetrix mask file to TGT=500
Submission date
Aug 16, 2005
Last update date
Sep 20, 2005
Contact name
Michael Rendl
E-mail(s)
[email protected] Organization name
Mount Sinai School of Medicine
Street address
1428 Madison Avenue
City
New York
State/province
NY
ZIP/Postal code
10029
Country
USA
Platform ID
GPL339 Series (1)
GSE3142 Molecular signatures in skin
Data table header descriptions ID_REF Affymetrix Identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE 1428299_at
188
P
0.001221
1431226_a_at
74.5
P
0.018555
1426662_at
250.2
P
0.000244
1419830_at
13.9
A
0.219482
1423763_x_at
6402.6
P
0.000244
1452718_at
1031.9
P
0.000732
1417020_at
3.4
A
0.665527
1425279_at
112.1
P
0.00415
1435301_at
5.9
A
0.962402
1437330_at
48
M
0.056152
1452940_x_at
15.5
A
0.303711
1460190_at
578.9
P
0.010742
1416810_at
213.8
P
0.00415
1451337_at
175.1
P
0.01416
1455605_at
50.4
P
0.001221
1433952_at
148.4
P
0.008057
1416225_at
58.1
A
0.111572
1418354_at
34.5
A
0.149658
1448668_a_at
139.7
P
0.000244
1437155_a_at
235.5
P
0.001953
22690 611 Kbytes .Supplementary file Size Download File type/resource GSM70238.CEL.gz
3.6 Mb
(ftp) (http) CEL
GSM70238.EXP.gz
364 b
(ftp) (http) EXP
