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Status
Public on Sep 20, 2005
Title
Matrix replicate 1
Sample type
RNA
Source name
Skin
Organism
Mus musculus Characteristics
FACSorted skin cells, matrix
Extracted molecule
total RNA
Extraction protocol
4 day old backskins were taken and Mx, ORS, DF, DP and Mc were FACSorted from Lef1-RFP/K14-H2BGFP mice. Total RNAs were prepared using the MicroPrep Kit (Stratagene)
Label
biotin
Label protocol
Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Hair follicle matrix cells
Data processing
Affymetrix Microarray Suite version 5.0, scaled with the Affymetrix mask file to TGT=500
Submission date
Aug 16, 2005
Last update date
Sep 20, 2005
Contact name
Michael Rendl
E-mail(s)
[email protected] Organization name
Mount Sinai School of Medicine
Street address
1428 Madison Avenue
City
New York
State/province
NY
ZIP/Postal code
10029
Country
USA
Platform ID
GPL339 Series (1)
GSE3142 Molecular signatures in skin
Data table header descriptions ID_REF Affymetrix Identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE 1428299_at
122.9
P
0.00293
1431226_a_at
56.6
A
0.067627
1426662_at
345.3
P
0.000244
1419830_at
8.9
A
0.5
1423763_x_at
9905.6
P
0.000244
1452718_at
908
P
0.001221
1417020_at
2.4
A
0.696289
1425279_at
91.7
P
0.01416
1435301_at
4.8
A
0.953857
1437330_at
47.7
A
0.171387
1452940_x_at
23.6
A
0.246094
1460190_at
901.4
P
0.005859
1416810_at
429.2
P
0.001953
1451337_at
157.6
P
0.037598
1455605_at
44.6
P
0.000244
1433952_at
195.8
P
0.023926
1416225_at
64.3
A
0.111572
1418354_at
10.9
A
0.334473
1448668_a_at
73.2
P
0.000732
1437155_a_at
114.2
P
0.01416
22690 608 Kbytes .Supplementary file Size Download File type/resource GSM70236.CEL.gz
3.5 Mb
(ftp) (http) CEL
GSM70236.EXP.gz
364 b
(ftp) (http) EXP
