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Sample GSM69682 Query DataSets for GSM69682
Status Public on Aug 20, 2005
Title NF3 MRC5
Sample type RNA
 
Channel 1
Source name cy3 MRC5
Organism Homo sapiens
Characteristics primary fetal lung fibroblasts (MRC-5)
Extracted molecule total RNA
Label cy3
 
Channel 2
Source name cy5 NF3
Organism Homo sapiens
Characteristics nodular fasciitis
Extracted molecule total RNA
Label cy5
 
 
Description nodular fasciitis from forearm
Data processing print tip normalization without background substruction
 
Submission date Aug 12, 2005
Last update date Aug 15, 2005
Contact name Eugenia Migliavacca
Organization name ISREC
Lab BCF
Street address Ch des Boveresses 155
City Epalinges
State/province Vaud
ZIP/Postal code 1066
Country Switzerland
 
Platform ID GPL2747
Series (1)
GSE3127 Expression profiling of desmoid tumors and nodular fasciitis

Data table header descriptions
ID_REF
VALUE log2 ratio of intensities (CH1I)/(CH2I)
AVALUE average log2 total signal intensity
GRID subarray identifier
ROW row in the subarray
COL column in the subarray
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF VALUE AVALUE GRID ROW COL CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 0.5401 10.76 1 1 1 2138 77 186 1399 73 99 137 1434 0 0.6434 0.7275 0.4108 0.7448 0.4636 0.9416 0.9708 0.927 0.9343 0.3874 0.3223 0 0.7332 0.000E+00 0.8194 0.000E+00
2 -0.1322 13.15 1 1 2 15053 78 175 5464 73 90 137 1363 0 0.36 0.3612 0.3264 0.9311 0.3313 0.9781 0.9562 0.9708 0.9124 0.4296 0.3955 0 0.8275 0.000E+00 0.8525 0.000E+00
3 -0.6059 11.57 1 1 3 5834 78 193 1575 72 87 137 1382 0 0.2611 0.2618 0.218 0.8774 0.221 0.8978 0.9124 0.8613 0.854 0.4522 0.3841 0 0.7003 0.000E+00 0.7719 0.000E+00
4 0.4796 7.41 1 1 4 209 76 183 139 71 82 137 1369 0 0.5113 0.955 0.01776 0.06258 0.01931 0.5693 0.6423 0.3066 0.4234 0.3331 0.2108 0 0.1089 9.706E-02 0.3393 3.596E-13
5 0.0195 7.27 1 1 5 227 76 177 105 72 83 137 1135 0 0.2185 0.343 0.01416 0.07268 0.01472 0.6058 0.6058 0.3358 0.2409 0.3782 0.2036 0 0.1272 3.492E-02 0.1894 2.529E-04
6 -0.4426 11.56 1 1 6 5476 77 180 1656 72 86 137 907 0 0.2934 0.3028 0.2462 0.8922 0.2498 0.9343 0.9416 0.8905 0.8613 0.4708 0.4081 0 0.7048 0.000E+00 0.7697 0.000E+00
7 3.8637 11.25 1 1 7 987 78 172 6028 72 88 137 896 0 6.552 7.474 3.458 0.6854 7.21 0.8394 0.9562 0.7007 0.927 0.4054 0.4413 0 0.4928 4.316E-26 0.8569 0.000E+00
8 0.0148 7.97 1 1 8 338 76 165 187 71 81 137 885 0 0.4427 0.4542 0.07584 0.2627 0.08217 0.635 0.781 0.4672 0.5693 0.389 0.2576 0 0.251 4.514E-07 0.502 5.068E-27
9 2.9402 8.88 1 1 9 238 75 178 937 72 82 137 885 0 5.307 4.354 0.144 0.06837 23.9 0.5693 0.9416 0.4088 0.8321 0.3984 0.3515 0 0.1809 7.020E-04 0.7443 0.000E+00
10 -1.1069 11.39 1 1 10 6150 76 188 1178 71 82 137 926 0 0.1823 0.1831 0.1616 0.8833 0.1628 0.9489 0.9416 0.9124 0.8759 0.4271 0.3862 0 0.7671 0.000E+00 0.7827 0.000E+00
11 -0.7771 10.93 1 1 11 3803 77 195 995 70 80 137 914 0 0.2483 0.2502 0.1974 0.8297 0.2008 0.927 0.927 0.8905 0.8467 0.4454 0.3772 0 0.6778 0.000E+00 0.7515 0.000E+00
12 null null 1 1 12 1413 77 187 1214 69 77 137 908 0 0.857 0.8336 0.5853 0.7364 0.7337 0.9051 0.9489 0.8102 0.8832 0.4036 0.3995 0 0.5942 8.337E-38 0.8028 0.000E+00
13 -0.6453 7.92 1 1 13 409 78 183 143 69 77 137 913 0 0.2236 0.2862 0.03476 0.1576 0.03649 0.7518 0.7591 0.562 0.4599 0.4282 0.246 0 0.3156 5.635E-11 0.427 9.690E-20
14 -0.844 11.96 1 1 14 8458 78 201 1878 69 77 137 913 0 0.2159 0.2073 0.1902 0.8842 0.1921 0.927 0.9343 0.8905 0.8613 0.4707 0.4074 0 0.7423 0.000E+00 0.7795 0.000E+00
15 2.3777 9.3 1 1 15 396 76 185 998 71 81 137 915 0 2.897 2.636 0.5742 0.332 3.734 0.7153 0.9051 0.5036 0.7737 0.3986 0.3735 0 0.2802 9.560E-09 0.6775 0.000E+00
16 4.613 10.4 1 1 16 416 75 180 4417 71 82 137 919 0 12.74 18.81 2.788 0.3692 20.14 0.7299 0.9635 0.5401 0.927 0.3969 0.4642 0 0.3312 4.656E-12 0.8703 0.000E+00
17 0.1428 9.8 1 1 17 1311 76 186 607 71 80 137 948 0 0.434 0.5112 0.2609 0.7069 0.2786 0.8978 0.8686 0.7737 0.7956 0.4073 0.3496 0 0.5598 8.605E-34 0.6954 0.000E+00
18 -0.5196 10.12 1 1 18 2040 76 172 603 71 82 137 941 0 0.2709 0.2966 0.1997 0.7869 0.2045 0.854 0.8686 0.7518 0.7664 0.4225 0.3355 0 0.5843 9.654E-37 0.6655 0.000E+00
19 0.6343 10.11 1 1 19 1363 76 176 896 70 82 137 995 0 0.6418 0.6707 0.4011 0.6996 0.4671 0.8905 0.9051 0.8175 0.8102 0.4212 0.3678 0 0.5797 2.058E-36 0.7092 0.000E+00
20 0.5068 10.1 1 2 1 1420 78 192 854 73 93 137 1358 0 0.582 0.5542 0.3824 0.7219 0.4323 0.8832 0.8978 0.781 0.7883 0.3848 0.353 0 0.5544 1.968E-34 0.6796 0.000E+00

Total number of rows: 11552

Table truncated, full table size 1909 Kbytes.




Supplementary data files not provided

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