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Status
Public on Jul 01, 2011
Title
P7, PRE, ANL non-lesional
Sample type
RNA
Source name
P7, PRE, ANL
Organism
Homo sapiens Characteristics
treatment: NB-UVB
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Kit protocol
Label
biotin
Label protocol
standard GeneChip Affymetrix protocol
Hybridization protocol
standard GeneChip Affymetrix protocol
Scan protocol
Hewlett–Packard Gene Array Scanner
Data processing
GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
Submission date
Mar 10, 2011
Last update date
Jul 01, 2011
Contact name
Mayte Suarez-Farinas
E-mail(s)
[email protected] Organization name
Mount SinaiSchool of Medicine
Street address
1425 Madison Ave, L2-70C, Box 1077,
City
New York
State/province
NY
ZIP/Postal code
10075
Country
USA
Platform ID
GPL570 Series (1)
GSE27887 Reversal of Atopic Dermatitis with Narrow-Band UVB Phototherapy and Biomarkers for Therapeutic Response
Data table header descriptions ID_REF VALUE log2 GCRMA with an additional quantile normalization
Data table ID_REF VALUE 1007_s_at
11.04723829
1053_at
8.344640793
117_at
6.251612771
121_at
4.222247164
1255_g_at
2.14844556
1294_at
7.621291191
1316_at
3.365281566
1320_at
2.202365879
1405_i_at
7.400749746
1431_at
4.735842293
1438_at
7.02821131
1487_at
9.109998625
1494_f_at
2.14844556
1552256_a_at
9.854875732
1552257_a_at
9.338370145
1552258_at
2.195768898
1552261_at
2.14844556
1552263_at
6.643781195
1552264_a_at
6.306137098
1552266_at
2.149258984
54675 1196 Kbytes .Supplementary file Size Download File type/resource GSM688756_23_HGU133_plus_2.0_Irma_030310.CEL.gz
5.3 Mb
(ftp) (http) CEL
Processed data included within Sample table
