|
| Status |
Public on Jan 04, 2023 |
| Title |
Pseudomonas protegens CHA0, DkaiC, rep. 1 |
| Sample type |
SRA |
| |
|
| Source name |
bacteria
|
| Organism |
Pseudomonas protegens CHA0 |
| Characteristics |
time: 72h
cell type: bacteria
genotype: DkaiC
treatment: LB broth
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol / RNeasy mini-kit column (Qiagen)
Novogene bacterial total RNA library for RNA-sequencing
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
CHAO_lateSta_count_table.txt
|
| Data processing |
fastp (v. 0.20.0) / trimming and adaptor removal
bowtie2 (v. 2.3.4.3) / mapping
featureCounts (v. 2.0.0) / counts
|
| |
|
| Submission date |
Dec 15, 2022 |
| Last update date |
Jan 04, 2023 |
| Contact name |
Diego Gonzalez |
| E-mail(s) |
[email protected]
|
| Phone |
+41786054819
|
| Organization name |
Laboratory of Microbiology, University of Neuchâtel
|
| Street address |
Rue Emile-Argand
|
| City |
Neuchâtel |
| ZIP/Postal code |
2000 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL32953 |
| Series (1) |
| GSE221044 |
Characterization of DkaiC mutants of Pseudomonas putida KT2440/2 and Pseudomonas protegens CHA0 |
|
| Relations |
| BioSample |
SAMN32250485 |
| SRA |
SRX18711712 |
