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GEO accession:
Sample GSM6783259
Query DataSets for GSM6783259
Status
Public on Dec 04, 2022
Title
microRNA-seq from gastrocnemius (ENCLB920ALV)
Sample type
SRA
Source name
Mus musculus strain 5xFAD/CAST male adult (8-10 months) gastrocnemius tissue
Organism
Mus musculus
Characteristics
tissue_type: gastrocnemius
biomaterial_type: tissue
biosample encode accession: ENCBS480BER (SAMN31998187)
organism: Mus musculus
Sex: male
dev stage: adult
age: 8-10 month
donor_id: ENCDO996MUL
lab: Barbara Wold, Caltech
source: The Jackson Laboratory
link: ENCBS480BER at ENCODE;
https://www.encodeproject.org/ENCBS480BER/
link: Derived from ENCODE donor ENCDO996MUL;
https://www.encodeproject.org/ENCDO996MUL/
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/49f43842-5ab4-4aa1-a6f4-2b1234955d93/@@download/attachment/Multiplexed%20miRNA%20Sequencing%20Library%20Generation%20Protocol-3.4.pdf
Library strategy
miRNA-Seq
Library source
transcriptomic
Library selection
size fractionation
Instrument model
NextSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR418QXY/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation 5xFAD/Cast mouse male gastrocnemius microRNA-seq from Mortazavi
experiment encode accession: ENCSR418QXY
assay title: microRNA-seq
assembly: mm10
encode release date: 2022-02-12
lab: Ali Mortazavi, UCI
library encode accession: ENCLB920ALV
size range: <30
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 03, 2022
Last update date
Jan 20, 2023
Contact name
ENCODE DCC
E-mail(s)
[email protected]
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL30172
Series (1)
GSE219809
microRNA-seq from gastrocnemius (ENCSR418QXY)
Relations
BioSample
SAMN31998187
SRA
SRX18486119
Named Annotation
GSM6783259_ENCFF153LBR_minus_strand_signal_of_all_reads_mm10.bigWig
Named Annotation
GSM6783259_ENCFF387UXK_minus_strand_signal_of_unique_reads_mm10.bigWig
Named Annotation
GSM6783259_ENCFF684TES_plus_strand_signal_of_all_reads_mm10.bigWig
Named Annotation
GSM6783259_ENCFF362MMQ_plus_strand_signal_of_unique_reads_mm10.bigWig
Supplementary file
Size
Download
File type/resource
GSM6783259_ENCFF153LBR_minus_strand_signal_of_all_reads_mm10.bigWig
6.5 Mb
(ftp)
(http)
BIGWIG
GSM6783259_ENCFF362MMQ_plus_strand_signal_of_unique_reads_mm10.bigWig
3.4 Mb
(ftp)
(http)
BIGWIG
GSM6783259_ENCFF387UXK_minus_strand_signal_of_unique_reads_mm10.bigWig
3.5 Mb
(ftp)
(http)
BIGWIG
GSM6783259_ENCFF453JOL_microRNA_quantifications_mm10.tsv.gz
9.3 Kb
(ftp)
(http)
TSV
GSM6783259_ENCFF684TES_plus_strand_signal_of_all_reads_mm10.bigWig
6.4 Mb
(ftp)
(http)
BIGWIG
GSM6783259_ENCLB920ALV_README.txt.gz
656 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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