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Sample GSM67082 Query DataSets for GSM67082
Status Public on Aug 06, 2005
Title Arabidopsis_Seedling01
Sample type RNA
 
Source name seedling
Organism Arabidopsis thaliana
Characteristics Landsberg erecta (Ler)
Growth protocol Seedling tissue was collected by growing Ler seedlings on Murashige and Skoog media plates for 10 days, and whole seedlings were harvested for RNA.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Hybridization protocol Affymetrix GeneChip technology
Description Seedling tissue was collected by growing Ler seedlings on Murashige and Skoog media plates for 10 days, and whole seedlings were harvested for RNA.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) [email protected], [email protected], [email protected]
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE expressoin value determined from probe set
ABS_CALL present (P) or absent (A)
DETECTION P-VALUE for present call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 275.6 P 0.005565
AFFX-BioB-M_at 258.9 P 0.000044
AFFX-BioB-3_at 205.3 P 0.000446
AFFX-BioC-5_at 599.1 P 0.000147
AFFX-BioC-3_at 349.0 P 0.000169
AFFX-BioDn-5_at 612.2 P 0.000044
AFFX-BioDn-3_at 3075.9 P 0.000052
AFFX-CreX-5_at 5927.3 P 0.000044
AFFX-CreX-3_at 9121.0 P 0.000044
AFFX-DapX-5_at 12.6 A 0.368438
AFFX-DapX-M_at 23.8 A 0.440646
AFFX-DapX-3_at 6.2 A 0.910522
AFFX-LysX-5_at 10.5 A 0.588620
AFFX-LysX-M_at 6.6 A 0.834139
AFFX-LysX-3_at 23.9 A 0.313723
AFFX-PheX-5_at 3.7 A 0.904333
AFFX-PheX-M_at 2.3 A 0.945787
AFFX-PheX-3_at 12.7 A 0.686277
AFFX-ThrX-5_at 17.4 A 0.455413
AFFX-ThrX-M_at 3.6 A 0.843268

Total number of rows: 22810

Table truncated, full table size 599 Kbytes.




Supplementary file Size Download File type/resource
GSM67082.cel.gz 3.3 Mb (ftp)(http) CEL
GSM67082.chp.gz 5.9 Mb (ftp)(http) CHP
GSM67082.dat.gz 27.3 Mb (ftp)(http) DAT
GSM67082.exp.gz 528 b (ftp)(http) EXP
GSM67082.rpt.gz 805 b (ftp)(http) RPT
Processed data provided as supplementary file

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