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Sample GSM67080 Query DataSets for GSM67080
Status Public on Aug 06, 2005
Title Arabidopsis_Ovary03
Sample type RNA
 
Source name plant ovary
Organism Arabidopsis thaliana
Characteristics Arabidosis thaliana ovaries
Growth protocol Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Hybridization protocol Affymetrix GeneChip technology
Description Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) [email protected], [email protected], [email protected]
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE signal averaged over probes
ABS_CALL absent or present
DETECTION P-VALUE indicating presence (lower value)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 204.4 A 0.072700
AFFX-BioB-M_at 228.7 P 0.000127
AFFX-BioB-3_at 139.1 P 0.016670
AFFX-BioC-5_at 500.6 P 0.000509
AFFX-BioC-3_at 248.0 P 0.002023
AFFX-BioDn-5_at 356.8 P 0.000044
AFFX-BioDn-3_at 2059.2 P 0.000095
AFFX-CreX-5_at 4981.1 P 0.000044
AFFX-CreX-3_at 7235.1 P 0.000044
AFFX-DapX-5_at 40.7 A 0.343687
AFFX-DapX-M_at 50.9 A 0.210455
AFFX-DapX-3_at 5.4 A 0.963431
AFFX-LysX-5_at 8.0 A 0.574038
AFFX-LysX-M_at 8.0 A 0.794268
AFFX-LysX-3_at 23.3 A 0.485110
AFFX-PheX-5_at 7.7 A 0.941556
AFFX-PheX-M_at 5.9 A 0.910522
AFFX-PheX-3_at 15.2 A 0.760937
AFFX-ThrX-5_at 7.8 A 0.860518
AFFX-ThrX-M_at 8.3 A 0.740172

Total number of rows: 22810

Table truncated, full table size 599 Kbytes.




Supplementary file Size Download File type/resource
GSM67080.cel.gz 3.5 Mb (ftp)(http) CEL
GSM67080.chp.gz 6.2 Mb (ftp)(http) CHP
GSM67080.dat.gz 30.5 Mb (ftp)(http) DAT
GSM67080.exp.gz 505 b (ftp)(http) EXP
GSM67080.rpt.gz 804 b (ftp)(http) RPT
Processed data provided as supplementary file

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