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GEO accession:
Sample GSM67047
Query DataSets for GSM67047
Status
Public on Mar 16, 2006
Title
HeLa hypoxia batch 2
Sample type
RNA
Source name
HeLa
Organism
Homo sapiens
Characteristics
Human cervical cancer cells
Extracted molecule
total RNA
Extraction protocol
Label
biotin
Label protocol
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
astrocytes from second trimester (14-19 weeks) human fetal brains
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 03, 2005
Last update date
Mar 16, 2006
Contact name
Sarah Mense
E-mail(s)
[email protected]
Organization name
Columbia University
Department
Environmental Health Sciences
Lab
Dr. Zhang
Street address
722 West 168th Street
City
New York
State/province
NY
ZIP/Postal code
10032
Country
USA
Platform ID
GPL570
Series (2)
GSE3051
HeLa response to hypoxia
GSE4483
Astrocyte and Hela cell response to hypoxia
Data table header descriptions
ID_REF
Affymetrix ID reference
VALUE
GCOS 1.2-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
3204.7
P
0.000581
AFFX-BioB-M_at
4866.9
P
0.000052
AFFX-BioB-3_at
2393.4
P
0.000044
AFFX-BioC-5_at
10840.8
P
0.000044
AFFX-BioC-3_at
7702.2
P
0.000044
AFFX-BioDn-5_at
14264.7
P
0.000044
AFFX-BioDn-3_at
34040.6
P
0.00007
AFFX-CreX-5_at
58861.7
P
0.000044
AFFX-CreX-3_at
59162.9
P
0.000044
AFFX-DapX-5_at
30.1
A
0.574038
AFFX-DapX-M_at
49.4
A
0.5
AFFX-DapX-3_at
12.7
A
0.749204
AFFX-LysX-5_at
8.5
A
0.783476
AFFX-LysX-M_at
74.3
A
0.455413
AFFX-LysX-3_at
14.7
A
0.455413
AFFX-PheX-5_at
7.1
A
0.98333
AFFX-PheX-M_at
7.5
A
0.904333
AFFX-PheX-3_at
24.6
A
0.52976
AFFX-ThrX-5_at
23
A
0.783476
AFFX-ThrX-M_at
28.9
A
0.470241
Total number of rows:
54675
Table truncated, full table size
1433 Kbytes
.
Supplementary data files not provided
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