|
| Status |
Public on Feb 20, 2023 |
| Title |
231_10uMCd_2 |
| Sample type |
SRA |
| |
|
| Source name |
MDA-MB-231
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MDA-MB-231
cell type: breast
treatment: cadmium
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Active Motif: ATAC-Seq kit
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
10 uM cadmium replicate 2
|
| Data processing |
FASTQ files were run using ENCODE ATAC-seq pipeline 1.8.0
bam files generated for each replicate were merged using samtools merge
bigwig files were generated for merged bam files using deeptools Bamcoverage
Assembly: hg38
Supplementary files format and content: bigwig files contain coverage tracks using CPM
|
| |
|
| Submission date |
Oct 25, 2022 |
| Last update date |
Feb 20, 2023 |
| Contact name |
Gregory Wright |
| Organization name |
University of Colorado Anschutz Medical Campus
|
| Street address |
12800 East 19th Ave
|
| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
| |
|
| Platform ID |
GPL20301 |
| Series (1) |
| GSE216496 |
ATAC-seq in cadmium resistant breast cancer MDA-MB-231 cells |
|
| Relations |
| BioSample |
SAMN31437027 |
| SRA |
SRX18014010 |
