|
| Status |
Public on Oct 01, 2022 |
| Title |
KT2440 LB 1 mM selenite (replicate 1) |
| Sample type |
SRA |
| |
|
| Source name |
bacterial
|
| Organism |
Pseudomonas putida KT2440 |
| Characteristics |
cell type: bacterial
condition: LB + selenite
|
| Treatment protocol |
1 hour exposure to 1 mM selenite.
|
| Growth protocol |
Cells cultured in LB for 1 hour either in the absence or presence of 1 mM selenite.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen bacterial RNA extraction kit.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
mRNA
Sequenced by Novogene Ltd
SelR1
|
| Data processing |
not provided
Assembly: not provided
Supplementary files format and content: Selenite.RawCounts.csv
|
| |
|
| Submission date |
Sep 28, 2022 |
| Last update date |
Oct 01, 2022 |
| Contact name |
Jose Jimenez |
| E-mail(s) |
[email protected]
|
| Organization name |
Imperial College London
|
| Street address |
South Kensington Campus
|
| City |
London |
| ZIP/Postal code |
SW7 2AZ |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL17091 |
| Series (1) |
| GSE214391 |
Transcriptome of Pseudomonas putida KT2440 in response to selenite |
|
| Relations |
| BioSample |
SAMN31069839 |
| SRA |
SRX17737871 |
