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Sample GSM65946 Query DataSets for GSM65946
Status Public on Mar 24, 2006
Title Blood_Forward
Sample type RNA
 
Channel 1
Source name Blood 635
Organism Bos taurus
Characteristics Male, 2 week old Jersey calf
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Universal Control 532
Organism Bos taurus
Characteristics Total RNA from bovine cell cultures of :
Brain
EBTR (tracheal cell line)
MDBK (kidney cell line)
BL-30 (lymphocyte line)
Extracted molecule total RNA
Label Cy3
 
 
Description Samples were labeled with an indirect labeling protocol using amino-allyl dUTP and hybridized overnight at 42C
Data processing Value = log2 ratio of background corrected 632 median/background corrected 532 median
 
Submission date Jul 26, 2005
Last update date Mar 24, 2006
Contact name Mark Robert Band
E-mail(s) [email protected]
Phone 217 244 3930
Fax 217 265 5066
Organization name University of Illinois
Department Biotechnology
Lab ERML 356
Street address 1201 W. Gregory Dr
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL2672
Series (1)
GSE3029 Gene expression profiling of 19 cattle tissues reveals unique patterns related to tissue function

Data table header descriptions
ID_REF
F635 Median median feature pixel intensity for 635 channel
F635 Mean mean feature pixel intensity for 635 channel
F635 SD standard deviation of pixel intensity for 635 channel
B635 Median median local background pixel intensity for 635 channel
B635 Mean mean local background pixel intensity for 635 channel
B635 SD standard deviation of local background intensity for 635 channel
F532 Median median feature pixel intensity for 532 channel
F532 Mean mean feature pixel intensity for 532 channel
F532 SD standard deviation of pixel intensity for 532 channel
B532 Median median local background pixel intensity for 532 channel
B532 Mean mean local background pixel intensity for 532 channel
B532 SD standard deviation of local background intensity for 532 channel
VALUE log2 transform of the ratio of medians 635/532
Flags 0=present, -50=absent, -100=flagged bad, 50=flagged present, 100=flagged good

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD VALUE Flags
1 1224 1204 172 828 831 164 641 632 128 237 238 42 -0.029 0
2 1088 1122 271 775 787 160 493 488 106 233 233 40 0.268 0
3 948 949 203 780 798 175 595 593 99 238 242 60 -1.087 0
4 806 828 179 785 790 162 297 293 49 250 257 62 -1.162 -50
5 1241 1241 234 780 786 162 1287 1270 171 246 255 69 -1.175 0
6 1015 1017 193 785 787 154 571 561 92 255 257 45 -0.458 0
7 1066 1068 221 758 759 155 651 673 287 262 263 42 -0.337 0
8 816 815 189 728 732 152 492 497 91 258 263 57 -1.411 0
9 792 806 160 711 721 154 275 283 55 252 255 48 1.816 -50
10 4681 4662 745 717 776 783 4099 4007 814 228 298 1033 0.034 0
11 1085 1081 196 691 744 716 812 808 148 223 277 941 -0.58 0
12 833 860 155 667 678 148 563 567 112 230 229 41 -1.004 0
13 1043 1007 195 659 663 158 729 722 77 232 237 89 -0.372 0
14 826 839 172 659 660 163 528 532 147 221 224 81 -0.878 0
15 1178 1184 204 631 639 154 879 870 124 215 219 53 -0.28 0
16 1454 1525 284 634 638 144 1059 1000 253 211 211 40 -0.048 0
17 1063 1089 178 612 620 146 790 777 84 201 203 38 -0.385 0
18 1095 1069 190 609 619 146 833 866 146 199 203 41 -0.384 0
19 741 742 152 621 627 154 268 267 64 207 217 148 0.976 -50
20 742 724 135 610 614 137 346 343 61 203 207 44 -0.115 0

Total number of rows: 16128

Table truncated, full table size 969 Kbytes.




Supplementary data files not provided
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