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Sample GSM65712 Query DataSets for GSM65712
Status Public on Jun 20, 2009
Title SLVL08
Sample type RNA
 
Source name Splenic Lymphoma with villous lymphocytes
Organism Homo sapiens
Characteristics Splenic Lymphoma with villous lymphocytes
Extracted molecule total RNA
Extraction protocol Total RNA was purified using the TRIzol reagent
Label biotin
Label protocol Approximately 5 ug of total RNA was processed to produce biotinylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Description CD19-positive cells purified by magnetic cell separation from peripheral blood of splenic lymphoma with villous lymphocytes patients. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.
Data processing Affymetrix GCOS1.2
 
Submission date Jul 26, 2005
Last update date Jun 20, 2008
Contact name Katia Basso
E-mail(s) [email protected]
Phone 212-8515269
Fax 212-8515256
Organization name Columbia University
Department Institute for Cancer Genetics
Street address 1150 St. Nicholas Avenue
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL91
Series (1)
GSE2350 Normal and transformed human mature B cells

Data table header descriptions
ID_REF
VALUE Signal intensity obtained using GCOS 1.2
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M).
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 34.9 A 0.368438
AFFX-MurIL10_at 13.3 A 0.659339
AFFX-MurIL4_at 22.7 A 0.262827
AFFX-MurFAS_at 21.4 A 0.340661
AFFX-BioB-5_at 241.1 P 0.001248
AFFX-BioB-M_at 381.3 P 0.00011
AFFX-BioB-3_at 309.8 P 0.000169
AFFX-BioC-5_at 1189.4 P 0.00006
AFFX-BioC-3_at 977.3 P 0.000052
AFFX-BioDn-5_at 1681.1 P 0.000044
AFFX-BioDn-3_at 6372.1 P 0.00007
AFFX-CreX-5_at 8231.9 P 0.000044
AFFX-CreX-3_at 10096.4 P 0.000044
AFFX-BioB-5_st 18.2 A 0.39692
AFFX-BioB-M_st 33.4 A 0.52976
AFFX-BioB-3_st 10.9 A 0.916408
AFFX-BioC-5_st 5 A 0.945787
AFFX-BioC-3_st 1.7 A 0.760937
AFFX-BioDn-5_st 16.9 A 0.544587
AFFX-BioDn-3_st 46.9 A 0.205732

Total number of rows: 12600

Table truncated, full table size 310 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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