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Sample GSM65705 Query DataSets for GSM65705
Status Public on Jun 20, 2009
Title SLVL01
Sample type RNA
 
Source name Splenic Lymphoma with villous lymphocytes
Organism Homo sapiens
Characteristics Splenic Lymphoma with villous lymphocytes
Extracted molecule total RNA
Extraction protocol Total RNA was purified using the TRIzol reagent
Label biotin
Label protocol Approximately 5 ug of total RNA was processed to produce biotinylated cRNA targets
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Description CD19-positive cells purified by magnetic cell separation from peripheral blood of splenic lymphoma with villous lymphocytes patients. Targets were produced starting from 6 ug of total RNA following standard Affymetrix protocol.
Data processing Affymetrix GCOS1.2
 
Submission date Jul 26, 2005
Last update date Jun 20, 2008
Contact name Katia Basso
E-mail(s) [email protected]
Phone 212-8515269
Fax 212-8515256
Organization name Columbia University
Department Institute for Cancer Genetics
Street address 1150 St. Nicholas Avenue
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL91
Series (1)
GSE2350 Normal and transformed human mature B cells

Data table header descriptions
ID_REF
VALUE Signal intensity obtained using GCOS 1.2
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M).
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 7 A 0.910522
AFFX-MurIL10_at 51.7 A 0.455413
AFFX-MurIL4_at 6.6 A 0.834139
AFFX-MurFAS_at 4.2 A 0.9273
AFFX-BioB-5_at 435 P 0.000972
AFFX-BioB-M_at 654.8 P 0.000081
AFFX-BioB-3_at 293.6 P 0.001248
AFFX-BioC-5_at 1557.5 P 0.00006
AFFX-BioC-3_at 1002.4 P 0.000052
AFFX-BioDn-5_at 1648.5 P 0.000044
AFFX-BioDn-3_at 7900.9 P 0.00006
AFFX-CreX-5_at 10054.1 P 0.000044
AFFX-CreX-3_at 14676.3 P 0.000052
AFFX-BioB-5_st 20.3 A 0.425962
AFFX-BioB-M_st 30.5 A 0.275146
AFFX-BioB-3_st 6.2 A 0.897835
AFFX-BioC-5_st 5.6 A 0.921998
AFFX-BioC-3_st 3.6 A 0.804734
AFFX-BioDn-5_st 25.6 A 0.327079
AFFX-BioDn-3_st 70.5 P 0.039661

Total number of rows: 12600

Table truncated, full table size 309 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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